#!/usr/bin/sh dape init # Import the previous KEGG database dump dape import kegg.tsv dape add MyOrg # add mutant MyMut, a deletion mutant of MyOrg dape add-mut -m MyOrg -k deletion MyMut # add the proteins files found in this directory dgenome add-dir MyFolder dgenome add-ko MyOrg.tab dgenome start # add the phenomic files found in this directory dphenome add-dir MyPhenomicFolder dphenome zero dphenome start dphenome purge -d 3 keep-max dphenome plot dphenome rings # plot only the maps of the mutant dape map MyMut # Perform the network analysis dape start