Running with gitlab-runner 15.1.0 (76984217)
  on BB5 map runner pnPo3yJy
section_start:1659607495:resolve_secrets
Resolving secrets
section_end:1659607495:resolve_secrets
section_start:1659607495:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.1.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2455085299, slurm job id 
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 68123, build ref 74640ab6b28fa9037b36497bccb3b0d1bf5bfc7b, job ID 311870
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P68123, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag 
A slurm job will be created with name GL_J311870_PROD_P112_CP4_C5
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 687419
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M   --job-name=GL_J311870_PROD_P112_CP4_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P68123 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P68123 --ntasks=8 --jobid=687419 --cpus-per-task=1 --mem=30750M    
section_end:1659607507:prepare_executor
section_start:1659607507:prepare_script
Preparing environment
Running on r1i5n17 via bbpv1.epfl.ch...
section_end:1659607510:prepare_script
section_start:1659607510:get_sources
Getting source from Git repository
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1659607511:get_sources
section_start:1659607511:download_artifacts
Downloading artifacts
Downloading artifacts for build:coreneuron:mod2c:intel (311859)...
Runtime platform                                    arch=amd64 os=linux pid=237766 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=311859 responseStatus=200 OK token=Kx4k9Vkz
section_end:1659607512:download_artifacts
section_start:1659607512:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ cd ${SPACK_BUILD_DIR}
$ export BOOST_TEST_COLOR_OUTPUT=no
$ i_am_a_failure=0
$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1
   Site: r1i6n29
   Build name: Linux-icpc
Create new tag: 20220804-1005 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P68123/J311859/spack-build/spack-stage-coreneuron-develop-h52pf3c2lilm4gduccor4xbhtyuglcao/spack-build-h52pf3c
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: test-solver
      Start  6: lfp_test
      Start  7: ring_TEST
 1/18 Test  #5: test-solver ........................   Passed    0.63 sec
      Start 18: reporting_1
 2/18 Test  #7: ring_TEST ..........................   Passed    2.07 sec
      Start  8: ring_binqueue_TEST
 3/18 Test  #1: cmd_interface_test .................   Passed    2.29 sec
 4/18 Test  #3: alignment_test .....................   Passed    2.56 sec
      Start  9: ring_multisend_TEST
 5/18 Test  #4: queuing_test .......................   Passed    2.75 sec
 6/18 Test  #2: interleave_info_constructor_test ...   Passed    2.77 sec
      Start 10: ring_spike_buffer_TEST
 7/18 Test  #6: lfp_test ...........................   Passed    2.91 sec
 8/18 Test  #8: ring_binqueue_TEST .................   Passed    1.36 sec
      Start 11: ring_permute1_TEST
 9/18 Test  #9: ring_multisend_TEST ................   Passed    0.97 sec
      Start 12: ring_permute2_TEST
10/18 Test #10: ring_spike_buffer_TEST .............   Passed    0.82 sec
      Start 13: ring_gap_TEST
11/18 Test #11: ring_permute1_TEST .................   Passed    0.77 sec
      Start 14: ring_gap_binqueue_TEST
12/18 Test #13: ring_gap_TEST ......................   Passed    0.82 sec
      Start 15: ring_gap_multisend_TEST
13/18 Test #12: ring_permute2_TEST .................   Passed    0.92 sec
      Start 16: ring_gap_permute1_TEST
14/18 Test #14: ring_gap_binqueue_TEST .............   Passed    0.78 sec
      Start 17: ring_gap_permute2_TEST
15/18 Test #15: ring_gap_multisend_TEST ............   Passed    0.75 sec
16/18 Test #16: ring_gap_permute1_TEST .............   Passed    0.78 sec
17/18 Test #18: reporting_1 ........................***Failed    4.77 sec
 num_mpi=2

 
 Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020
 Version : 9.0.0 74640ab6 (2022-08-04 11:57:49 +0200)
 
 Additional mechanisms from files
 exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod

 Memory (MBs) :             After mk_mech : Max 12.4883, Min 12.2969, Avg 12.3926 
 Memory (MBs) :            After MPI_Init : Max 12.7461, Min 12.5547, Avg 12.6504 
 Memory (MBs) :          Before nrn_setup : Max 12.8555, Min 12.6719, Avg 12.7637 
no chkpnt line for 31
../spack-src/coreneuron/io/nrn_filehandler.cpp:96: Assertion 'n_scan == 1' failed.
MPT ERROR: Rank 1(g:1) received signal SIGABRT/SIGIOT(6).
	Process ID: 238524, Host: r1i5n17, Program: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P68123/J311859/spack-build/spack-stage-coreneuron-develop-h52pf3c2lilm4gduccor4xbhtyuglcao/spack-build-h52pf3c/bin/x86_64/special-core
	MPT Version: HPE HMPT 2.25  10/22/21 03:18:39

MPT: --------stack traceback-------
no chkpnt line for 33
../spack-src/coreneuron/io/nrn_filehandler.cpp:96: Assertion 'n_scan == 1' failed.
MPT: ImportError: No module named site

MPT: -----stack traceback ends-----
MPT: On host r1i5n17, Program /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P68123/J311859/spack-build/spack-stage-coreneuron-develop-h52pf3c2lilm4gduccor4xbhtyuglcao/spack-build-h52pf3c/bin/x86_64/special-core, Rank 1, Process 238524: Dumping core on signal SIGABRT/SIGIOT(6) into directory /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P68123/J311859/spack-build/spack-stage-coreneuron-develop-h52pf3c2lilm4gduccor4xbhtyuglcao/spack-build-h52pf3c/tests/integration/reporting_1
srun: error: r1i5n17: task 1: Aborted (core dumped)
srun: launch/slurm: _step_signal: Terminating StepId=687419.10
slurmstepd: error: *** STEP 687419.10 ON r1i5n17 CANCELLED AT 2022-08-04T12:05:42 ***
srun: error: r1i5n17: task 0: Terminated
srun: Force Terminated StepId=687419.10

18/18 Test #17: ring_gap_permute2_TEST .............   Passed    0.90 sec

94% tests passed, 1 tests failed out of 18

Total Test time (real) =   5.93 sec

The following tests FAILED:
	 18 - reporting_1 (Failed)
Errors while running CTest
$ cp -r Testing/ ${CI_PROJECT_DIR}/
$ module load unstable unit-test-translator
Autoloading python/3.9.7
$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml
$ exit ${i_am_a_failure}
srun: error: r1i5n17: task 0: Exited with exit code 1
section_end:1659607543:step_script
section_start:1659607543:upload_artifacts_on_failure
Uploading artifacts for failed job
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=239234 revision=58ba2b95 version=14.2.0
initial_environment.env: found 1 matching files and directories 
Testing/: found 8 matching files and directories   
Uploading artifacts as "archive" to coordinator... ok  id=311870 responseStatus=201 Created token=Kx4k9Vkz
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=239264 revision=58ba2b95 version=14.2.0
ctest.xml: found 1 matching files and directories  
Uploading artifacts as "junit" to coordinator... ok  id=311870 responseStatus=201 Created token=Kx4k9Vkz
section_end:1659607545:upload_artifacts_on_failure
section_start:1659607545:cleanup_file_variables
Cleaning up project directory and file based variables
section_end:1659607546:cleanup_file_variables
ERROR: Job failed: exit status 1